03-10-2024, 07:10 PM
I managed to convert 2 of the BAM files to 23andme raw data format using WGSExtract.
Unfortunately after i restarted the PC today, for some reason the program does not work anymore. it keeps saying "INVALID HEADER" when selecting the BAM files. i even tried to re-download them.
If someone wants to try here is the installer https://wgsextract.github.io/
and here the BAMs https://www.ebi.ac.uk/ena/browser/view/P...ed-records
So now, one of the 2 raw data i got is really small and low coverage, the other is decent.
Here it is
https://jumpshare.com/s/xMdkKOnmMSKkhaokUbLk
Simulated g25 from raw data using this https://www.exploreyourdna.com/rawtosimg25.aspx
CisalpineGaul_simulated_g25_scaled,0.12431,0.148961,0.041693,-0.000243,0.04654,-0.002854,0.000567,0.003719,0.019368,0.030393,-0.002852,0.005666,-0.0108,0.001443,-0.00644,-0.003143,0.003952,-0.000379,0.00322,-0.005928,-0.003865,-0.002557,0.000787,-0.004603,-0.001261
TUR_Barcin_N: 58.61 %
Yamnaya_RUS_Samara: 29.58 %
WHG: 11.62 %
MAR_Taforalt: 0.19 %
Distance to: CisalpineGaul_simulated_g25_scaled
0.02072854 Italian_Trentino-Alto-Adige
0.02330942 Spanish_Menorca
0.02344690 Spanish_Mallorca
0.02350668 Spanish_Baleares
0.02427447 Spanish_Peri-Barcelona
0.02472052 Italian_Veneto
0.02529940 Spanish_Catalunya_Central
0.02538017 Spanish_Girona
0.02556982 Spanish_Barcelones
0.02578240 Italian_Bergamo
0.02634774 Spanish_Pirineu
0.02645921 Spanish_Terres_de_l'Ebre
0.02648412 Spanish_Eivissa
0.02649972 Spanish_Camp_de_Tarragona
0.02710578 Italian_Northeast
0.02751564 Spanish_Lleida
0.02767254 Spanish_Penedes
0.02811645 Spanish_Valencia
0.02834991 Spanish_Cataluna
0.02952521 Spanish_Cantabria
0.02958048 Spanish_Castello
0.02961410 Spanish_Murcia
0.03020494 Spanish_Castilla_La_Mancha
0.03045957 French_Auvergne
0.03078674 French_Provence
Distance to: CisalpineGaul_simulated_g25_scaled
0.01757812 SRB_BA
0.01828934 HRV_IA
0.01945620 CZE_LBA_Knoviz_o3
0.02279324 AUT_IA_La_Tene
0.02337043 SVN_EIA
0.02350412 HRV_EIA
0.02386863 HUN_La_Tene
0.02455299 ITA_Etruscan_Casenovole
0.02490596 HUN_MBA_Vatya
0.02504431 HUN_IA_La_Tene
0.02605650 HRV_LIA_La_Tene
0.02647629 SRB_Mokrin_EBA_Maros
0.02701471 HRV_Bezdanjaca_BA
0.02705574 DEU_Roman
0.02729670 ITA_Etruscan
0.02756998 Iberia_Northeast_c.8-12CE
0.02781036 SRB_BA_Maros
0.02796691 ITA_Etruscan_Volterrra
0.02817529 HRV_BA
0.02890016 HRV_MBA
0.03018228 ITA_Etruscan_Tarquinia
0.03021870 CHE_IA
0.03076353 ITA_Ardea_Latini_IA
0.03145492 SVK_IA_Vekerzug
0.03203831 SRB_Mokrin_EBA_Maros_oAegean
Unfortunately after i restarted the PC today, for some reason the program does not work anymore. it keeps saying "INVALID HEADER" when selecting the BAM files. i even tried to re-download them.
If someone wants to try here is the installer https://wgsextract.github.io/
and here the BAMs https://www.ebi.ac.uk/ena/browser/view/P...ed-records
So now, one of the 2 raw data i got is really small and low coverage, the other is decent.
Here it is
https://jumpshare.com/s/xMdkKOnmMSKkhaokUbLk
Simulated g25 from raw data using this https://www.exploreyourdna.com/rawtosimg25.aspx
CisalpineGaul_simulated_g25_scaled,0.12431,0.148961,0.041693,-0.000243,0.04654,-0.002854,0.000567,0.003719,0.019368,0.030393,-0.002852,0.005666,-0.0108,0.001443,-0.00644,-0.003143,0.003952,-0.000379,0.00322,-0.005928,-0.003865,-0.002557,0.000787,-0.004603,-0.001261
TUR_Barcin_N: 58.61 %
Yamnaya_RUS_Samara: 29.58 %
WHG: 11.62 %
MAR_Taforalt: 0.19 %
Distance to: CisalpineGaul_simulated_g25_scaled
0.02072854 Italian_Trentino-Alto-Adige
0.02330942 Spanish_Menorca
0.02344690 Spanish_Mallorca
0.02350668 Spanish_Baleares
0.02427447 Spanish_Peri-Barcelona
0.02472052 Italian_Veneto
0.02529940 Spanish_Catalunya_Central
0.02538017 Spanish_Girona
0.02556982 Spanish_Barcelones
0.02578240 Italian_Bergamo
0.02634774 Spanish_Pirineu
0.02645921 Spanish_Terres_de_l'Ebre
0.02648412 Spanish_Eivissa
0.02649972 Spanish_Camp_de_Tarragona
0.02710578 Italian_Northeast
0.02751564 Spanish_Lleida
0.02767254 Spanish_Penedes
0.02811645 Spanish_Valencia
0.02834991 Spanish_Cataluna
0.02952521 Spanish_Cantabria
0.02958048 Spanish_Castello
0.02961410 Spanish_Murcia
0.03020494 Spanish_Castilla_La_Mancha
0.03045957 French_Auvergne
0.03078674 French_Provence
Distance to: CisalpineGaul_simulated_g25_scaled
0.01757812 SRB_BA
0.01828934 HRV_IA
0.01945620 CZE_LBA_Knoviz_o3
0.02279324 AUT_IA_La_Tene
0.02337043 SVN_EIA
0.02350412 HRV_EIA
0.02386863 HUN_La_Tene
0.02455299 ITA_Etruscan_Casenovole
0.02490596 HUN_MBA_Vatya
0.02504431 HUN_IA_La_Tene
0.02605650 HRV_LIA_La_Tene
0.02647629 SRB_Mokrin_EBA_Maros
0.02701471 HRV_Bezdanjaca_BA
0.02705574 DEU_Roman
0.02729670 ITA_Etruscan
0.02756998 Iberia_Northeast_c.8-12CE
0.02781036 SRB_BA_Maros
0.02796691 ITA_Etruscan_Volterrra
0.02817529 HRV_BA
0.02890016 HRV_MBA
0.03018228 ITA_Etruscan_Tarquinia
0.03021870 CHE_IA
0.03076353 ITA_Ardea_Latini_IA
0.03145492 SVK_IA_Vekerzug
0.03203831 SRB_Mokrin_EBA_Maros_oAegean